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Progress in Chemistry 2010, Vol. 22 Issue (01): 1-8   Next Articles

• Invited Article •

Microsolvation Process of Biomolecules

Zhong Liang;  Hu Yongjun**;  Xing Da;  Zou Hao   

  1. (South China Normal University, MOE Key Lab of Laser Life Science & Institute of Laser Life Science, Guangzhou 510631, China)
  • Received: Revised: Online: Published:
  • Contact: Hu Yongjun E-mail:yjhu@scnu.edu.cn
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Researches on the dynamics of microsolvation process is a hot topic. Combining spectroscopy and mass spectrometry with ab initio or density functional theory (DFT) computation methods, we can understand how the solvent molecules affect configurations and conformers of the biomolecules in the gas phase by studying of clusters of biomolecules and solvent molecules. We introduce several advanced experimental technologies and their applications in the field at first., and then list a few theoretical methods for calculation and simulation. The recent research progress on the microsolvation process of the amino acids with the solvent molecules such as water, methanol, and the recent studies on the solvent clusters of the nucleobases, sugars and neurotransmitters are reviewed. Future prospects in this field are provided in the end.

Contents
1 Introduction
2 Experimental technologies and theoretical methods
2.1 Experimental technologies
2.2 Theoretical methods
3 Research progresses on the microsolvation process of several biomolecules
3.1 Amino acids
3.2 Nucleobases
3.3 Sugars
3.4 Neurotransmitters
4 Conclusion and prospects

Key words: clusters, biomolecules, microsolvation, ab initio, laser spectroscopy

CLC Number: 

[ 1 ] 　Brechignac P, Coutant B. Z. Phys. D: At. Mol. Clusters,1989, 14: 87—88
[ 2 ] 　Vu T B C, Kalkman I, MeertsW L, et al. J. Chem. Phys. ,2008, 128: art. no. 214311
[ 3 ] 　Chuchev K, BelBruno J J. J. Mole. Struct. THEOCHEM,2008, 850: 111—120
[ 4 ] 　Abo2Riziq A, Crews B, Grace L, et al. J. Am. Chem. Soc. ,2005, 127: 2374—2375
[ 5 ] 　Tanner C, Thut M, Steinlin A, et al. J. Phys. Chem. A,2006, 110: 1758—1766
[ 6 ] 　Cüarcüabal P, Jockusch R A, Hunig I, et al. J. Am. Chem. Soc. , 2005, 127: 11414—11425
[ 7 ] 　Hall R B. J. Phys. Chem. , 1987, 91: 1007—1015
[ 8 ] 　Boesl U, Neusser H J, Schlag E W. J. Chem. Phys. , 1980,72: 4327—4333
[ 9 ] 　Crews B, Abo2Riziq A, Grace L, et al. Phys. Chem. Chem. Phys. , 2005, 7: 3015—3020
[ 10 ] 　Dian B C, LongarteA, Zwier T S. Science, 2002, 296: 2369—2373
[ 11 ] 　Dian B C, Clarkson J R, Zwier T S. Science, 2004, 303:1169—1173
[ 12 ] 　Zwier T S. J. Phys. Chem. A, 2001, 105: 8827—8839
[ 13 ] 　Carcabal P, Kroemer R T, Snoek L C, et al. Phys. Chem. Chem. Phys. , 2004, 6: 4546—4552
[ 14 ] 　Jensen J H, Day P N, GordonM S, et al. ACS Symposium Series 569 ( Ed. Smith D A) . American Chemical Society, 1994.139—151
[ 15 ] 　Day P N, Jensen J H, Gordon M S, et al. J. Chem. Phys. ,1996, 105: 1968—1986
[ 16 ] 　Adamovic I, FreitagM A, GordonM S. J. Chem. Phys. , 2003,118: 6725—6732
[ 17 ] 　Song J, GordonM S, Deakyne C A, et al. J. Phys. Chem. A,2004, 108: 11419—11432
[ 18 ] 　Kirkwood J G. J. Chem. Phys. , 1934, 2: 351—361
[ 19 ] 　Onsager L. J. Am. Chem. Soc. , 1936, 58: 1486—1493
[ 20 ] 　Miertus S, Scrocco E, Tomasi J. Chem. Phys. , 1981, 55:117—129
[ 21 ] 　Klamt A, Schuurmann G. J. Chem. Soc. Perkin Trans. 2,1993, 799—805
[ 22 ] 　Truong T N, Stefanovich E V. Chem. Phys. Lett. , 1995, 240:253—260
[ 23 ] 　Li J, Hawkins G D, Cramer C J, et al. Chem. Phys. Lett. ,1998, 288: 293—298
[ 24 ] 　Hawkins GD, Zhu T, Li J, et al. Abstracts of Papers of the ACS( Eds. Gao J, Thomp son M A ) . American Chemical Society,1997. 197
[ 25 ] 　Russell S T, WarshelA. J. Mol. Biol. , 1985, 185: 389—404
[ 26 ] 　Rzepa H S, Yi M. J. Chem. Soc. Perkin Trans. 2, 1991,531—537
[ 27 ] 　De VriesA H, Van Duijnen P T, Juffer A H, et al. J. Comp.
[ 28 ] 　Bandyopadhyay P, GordonM S. J. Chem. Phys. , 2000, 113:1104—1109
[ 29 ] 　Fernandez2Ramos A, Smedarchina Z, Siebrand W, et al. J.Chem. Phys. , 2000, 113: 9714—9721
[ 30 ] 　Bandyopadhyay P, GordonM S, Mennucci B, et al. J. Chem.Phys. , 2002, 116: 5023—5032
[ 31 ] 　Cui Q. J. Chem. Phys. , 2002, 117: 4720—4728
[ 32 ] 　Aikens CM, Mark S, GordonM S. J. Am. Chem. Soc. , 2006,128: 12835—12850
[ 33 ] 　ShirtsM R, Pande V S. J. Chem. Phys. , 2005, 122: art. no.134508
[ 34 ] 　Kassab E, Langlet J, Evleth E, et al. J. Mole. Struct. THEO CHEM, 2000, 531: 267—282
[ 35 ] 　Peteanu L A, Levy D H. J. Phys. Chem. , 1988, 92:6554—6561
[ 36 ] 　Teh C K, Sip ior J, Sulkes M. J. Phys. Chem. , 1989, 93:5393—5400
[ 37 ] 　Snoek L C, Kroemer R T, Simons J P. Phys. Chem. Chem.Phys. , 2002, 4: 2130—2139
[ 38 ] 　Ebata T, Hashimoto T, Ito T, et al. Phys. Chem. Chem.Phys. , 2006, 8: 4783—4791
[ 39 ] 　Desiraju G R, Steiner T. TheWeak Hydrogen Bond in Structural Chemistry and Biology. New York: Oxford University Press, 1999
[ 40 ] 　KaczorA, Reva I D, Proniewicz L M, et al. J. Phys. Chem.A, 2006, 110: 2360—2370
[ 41 ] 　Lee K T, Sung J, Lee K J, et al. J. Chem. Phys. , 2002, 116:8251—8254
[ 42 ] 　Tajkhorshid E, Jalkanen K J, Suhai S. J. Phys. Chem. B,1998, 102: 5899—5913
[ 43 ] 　Park SW, Ahn D S, Lee S. Chem. Phys. Lett. , 2003, 371:74—79
[ 44 ] 　Ahn D S, Park SW, Jeon I S, et al. J. Phys. Chem. B, 2003,107: 14109—14118
[ 45 ] 　Balta B, Aviyente V. J. Comput. Chem. , 2004, 25: 690—703
[ 46 ] 　Rodziewicz P, DoltsinisN L. ChemPhysChem, 2007, 8: 1959—1968
[ 47 ] 　Blom M N, Compagnon I, Polfer N C, et al. J. Phys. Chem.A, 2007, 111: 7309—7316
[ 48 ] 　Suenram R D, Lovas F J. J. Mol. Spectrosc. , 1978, 72: 372—382
[ 49 ] 　GutowskiM, Skurski P, Simons J. J. Am. Chem. Soc. , 2000,122: 10159—10162
[ 50 ] 　Wada G, Tamura E, OkinaM, et al. Bull. Chem. Soc. Jpn. ,1982, 55: 3064—3067
[ 51 ] 　Gaffney J S, Pierce R C, Friedman L. J. Am. Chem. Soc. ,1977, 99: 4293—4298
[ 52 ] 　GordonM S, Jensen J H. Acc. Chem. Res. , 1996, 29: 536—543
[ 53 ] 　Lijima K, Tanaka K, Onuca S. J. Mol. Struct. , 1991, 246:257—266
[ 54 ] 　Nguyen D T, ScheimerA C, Andzelm J W, et al. J. Comput.Chem. , 1997, 18: 1609—1631
[ 55 ] 　Jensen J H, Gordon M S. J. Am. Chem. Soc. , 1995, 117:8159—8170
[ 56 ] 　Alonso J L, Cocinero E J, LesarriA, et al. Angew. Chem. Int.Ed. , 2006, 45: 3471—3174
[ 57 ] 　Chaudhari A, Sahu P K, Lee S L. J. Chem. Phys. , 2004,120: 170—174
[ 58 ] 　WangW, Pu X, ZhengW, et al. J. Mol. Struct. THEOCHEM,2003, 626: 127—132
[ 59 ] 　FormerW, Otto P, Bernhardt J, et al. Theor. Chim. Acta,1981, 60: 269—281
[ 60 ] 　Kokpol S U, Doungdee P B, Hannongbua S V, et al. J. Chem. Soc. Faraday Trans. , 1988, 284: 1789—1792
[ 61 ] 　Bachrach SM. J. Phys. Chem. A, 2008, 112: 3722—3730
[ 62 ] 　Yamabe S, Ono N, Tsuchida N. J. Phys. Chem. A, 2003,107: 7915—7922
[ 63 ] 　Jeon I S, Ahn D S, Park SW, et al. Inter. J. Quan. Chem. ,2005, 101: 55—66
[ 64 ] 　Xu S J, NillesM, Bowen K H. J. Chem. Phys. , 2003, 119:10696—10701
[ 65 ] 　Diken E G, Headrick J M, Johnson M A. J. Chem. Phys. ,2005, 122: art. no. 224317
[ 66 ] 　Piuzzi F, MonsM, Dimicoli I, et al. Chem. Phys. , 2001, 270:205—214
[ 67 ] 　Kim N J, Kang H, Jeong G, et al. J. Phys. Chem. A, 2000,104: 6552—6557
[ 68 ] 　Kang H, Lee K T, Kim S K. Chem. Phys. Lett. , 2002, 359:213—219
[ 69 ] 　Close D M, Crespo2Hernandez C E, Gorb L, et al. J. Phys.Chem. A, 2006, 110: 7485—7490
[ 70 ] 　HanusM, Ryjacek F, KabelacM, et al. J. Am. Chem. Soc. ,2003, 125: 7678—7688
[ 71 ] 　HanusM, Kabelac M, Rejnek J, et al. J. Phys. Chem. B,2004, 108: 2087—2097
[ 72 ] 　Belau L, Wilson K R, Leone S R, et al. J. Phys. Chem. A,2007, 111: 7562—7568
[ 73 ] 　Kim S K, Lee W, Herschbach D H. J. Phys. Chem. , 1996,100: 7933—7937
[ 74 ] 　He Y G, Wu C Y, KongW. J. Phys. Chem. A, 2004, 108:943—949
[ 75 ] 　KabelacM, Hobza P. Chem. Eur. J. , 2001, 7: 2067—2074
[ 76 ] 　KabelacM, Ryjacek F, Hobza P. Phys. Chem. Chem. Phys. ,2000, 2: 4906—4909
[ 77 ] 　Sivanesan D, Sumathi I, Welsh W J. Chem. Phys. Lett. ,2003, 367: 351—360
[ 78 ] 　HaranczykM, Rak J, GutowskiM, et al. J. Phys. Chem. B,2005, 109: 13383—13391
[ 79 ] 　Eustis S, WangD, Lyapustina S, et al. J. Chem. Phys. , 2007,127: art. no. 224309
[ 80 ] 　Jockusch R A, Talbot F O, Simons J P. Phys. Chem. Chem.Phys. , 2003, 5: 1502—1507
[ 81 ] 　Jockusch R A, Kroemer R T, Talbot F O, et al. J.Chem. , 1995, 16: 1445—1446Chem. , 2003, 107: 10725—10732
[ 82 ] 　Jockusch R A, Kroemer R T, Talbot F O, et al. J. Am. Chem.Soc. , 2004, 126: 5709—5714
[ 83 ] 　Talbot F O, Simons J P. Phys. Chem. Chem. Phys. , 2002, 4:3562—3565
[ 84 ] 　Hunig I, Painter A J, Jockusch R A, et al. Phys. Chem.Chem. Phys. , 2005, 7: 2474—2480
[ 85 ] 　Schmidt R, Karp lus M, Brady J W. J. Am. Chem. Soc. ,1996, 118: 541—546
[ 86 ] 　Hoog C, Widmalm G. J. Phys. Chem. , 2001, 105:6375—6379
[ 87 ] 　Sun S, Bernstein E R. J. Am. Chem. Soc. , 1996, 118:5086—5095
[ 88 ] 　Yaov J, Im H S, Foltin M, et al. J. Phys. Chem. A, 2000,10: 6197—6211
[ 89 ] 　Brause R, Fricke H, GerhardsM, et al. Chem. Phys. , 2006,327: 43—53
[ 90 ] 　Giardiniv A, Marotta V, Paladini A, et al. App l. Sur. Sci. ,2007, 253: 7767—7772
[ 91 ] 　Floriov GM, Zwier T S. J. Phys. Chem. A, 2003, 107: 974—983
[ 92 ] 　Hu Y J, Bernstein E R. J. Chem. Phys. , 2008, 128: art. no.164311
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Abstract

Microsolvation Process of Biomolecules