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Progress in Chemistry 2015, Vol. 27 Issue (9): 1260-1274 DOI: 10.7536/PC150203 Previous Articles   Next Articles

• Review and comments •

Conformational Restriction of Peptidomimetics in Drug Design

Hou hui, Sun Dequn*   

  1. Marine College, Shandong University at Weihai, Weihai 264209, China
  • Received: Revised: Online: Published:
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Peptidomimetics are important drug design tools as substitutes for peptides in active sites of enzymes and receptors. The incorporation of some specific structure into biologically active peptides may lead to conformationally restricted peptidomimetics. Conformational restriction of peptidomimetics may significantly improve the pharmacodynamic properties and pharmacokinetic properties, including bioactivity, selectivity to receptors, stability of metabolism and absorption properties. To develop new approaches, allow rational design and synthesis of restricted peptidomimetics is of importance. Herein, we review two approaches to access conformationally restricted peptidomimetics, the local conformational restriction approach and the overall cyclization approach.

Contents
1 Introduction
2 Local conformational restriction of peptide
2.1 Cα-methylated amino acids
2.2 N-methylated amino acids
2.3 Cα,Cα-dialkyl amino acids
2.4 Cβ,Cβ-dialkyl amino acids
2.5 α,β-unsaturated amino acids
2.6 C-C cyclization of amino acids
2.7 C-N cyclization of amino acids
2.8 N-N cyclization of amino acids
3 The overall cyclization of peptides
3.1 The overall cyclization methods of peptides
3.2 Other cyclization methods expect lactam bond
4 Conclusion

CLC Number: 

[1] Vlieghe P, Lisowski V, Martinez J, Khrestchatisky M. Drug Discovery Today, 2010, 15(1/2): 40.
[2] Craik D J, Fairlie D P, Liras S. Chem. Biol. Drug Des., 2013, 81(1): 136.
[3] Wood M P, Cole1 A L, Ruchala P, Waring A J, Rohan L C, Marx P, Tarwater P M, Gupta P, Cole A M. PLoS One, 2013, 8(2): 1.
[4] Crisma M, Formaggio F, Toniolo C, Yoshikawa T, Wakamiya T. J. Am. Chem. Soc., 1999, 121: 3272.
[5] Pirat C, Farce A, Lebègue N, Renault N, Furman C, Millet R, Yous S, Speca S, Berthelot P. J. Med. Chem., 2012, 55: 4027.
[6] Olson G L, Bolin D R, Bonner M P. J. Med. Chem., 1993, 36: 3039.
[7] Mills F D, Antharam V C, Ganesh O K, Elliott D W, McNeill S A, Long J R. Biochemistry, 2008, 47: 8292.
[8] Demirev P A. Anal. Chem., 2013, 85: 779.
[9] Chang L C, Yang C Y, Chu A C N, Lin Y J, Lai S M. Pharmaceutics, 2011, 8: 1767.
[10] Han J, Sun L D, Chu Y Y, Li Z, Huang D D, Zhu X Y. J. Med. Chem., 2013, 56: 9955.
[11] Bausch D, Thomas S, Mino-Kenudson M, Castillo C F, Bauer T W, Williams M, Warshaw A L, Thayer S P, Kelly K A. Clin. Cancer Res., 2011, 17(2): 302.
[12] Jung K H, Angela H S, Stanley A T. Molecular pharmacology, 2011, 80(3): 357.
[13] 周家驹(Zhou J J), 雷静(Lei J), 谢桂荣(Xie G R). 化学进展(Progress in Chemistry), 2000, 12(2/3): 332.
[14] Karle Z L, Flppen-Anderson J L, Uma K, Balaram P. Biopolymers, 1990, 29(14): 1835.
[15] Toniolo C, Crisma M, Formaggio F, Valle C, Cavicchioni G, Precigoux G, Aubry A, Kamphuis J. Biopolymers, 1993, 33 (7): 1061.
[16] Dehner A, Planker E, Gemmecker G, Broxterman Q B, Bisson W, Formaggio F, Crisma M, Toniolo C, Kessler H. J. Am. Chem. Soc., 2001, 123: 6678.
[17] Dechantsreiter M A, Planker E, Matha B, Lohof E, Kessler H. J. Med. Chem., 1999, 42: 3033.
[18] Chatterjee J, Ovadia O, Zahn G, Marinelli L, Hoffman A, Gilon C, Kessler H. J. Med. Chem., 2007, 50: 5878.
[19] Nowick S S. Acc. Chem.Res., 2008, 41: 1319.
[20] Formaggio F, Crisma M, Toniolo C. Macromolecules, 2003, 36: 8164.
[21] Evans M C, Pradhan A, Venkatraman S, Ojala W H, Gleason W B, Mishra R K, Johnson R L. J. Med. Chem., 1999, 42: 1441.
[22] Kruszynski M, Lammek B, Manning M. J. Med. Chem., 1980, 23: 364.
[23] Baldisserotto A, Ferretti V, Destro F, Franceschini C, Marastoni M, Gavioli R, Tomatis R. J. Med. Chem., 2010, 53: 6511.
[24] Subasinghe N, Schulte M, Chan M Y M, Roon R J, Koerner J F, Johnsony R L. J. Med. Chem., 1990, 33: 2734.
[25] Cativiela C, Fraile J M, Mayoral J A. Bull. Chem. Soc. Jpn., 1990, 63(8): 2456.
[26] Jimenez A I, Cativiela C, Marraud M. Tetrahedron, 2000, 5353.
[27] 张刘生(Zhang L S), 潘成学(Pan C X). 广西师范大学学报(Journal of Guangxi Normal University), 2011, 29(3): 37.
[28] Naiema M, Julien D, Bruno C, Laurence V B, Nicole B Sandrine O, Fariza R, Michele R R, Sames S. J. Med. Chem., 2004, 47: 6392.
[29] Martin S F, Dorsey G O, Gane T, Hillier M C. J. Med. Chem., 1998, 41: 1581.
[30] Schiller P W, Weltrowska G, Nguyen T M D, Lemieux C, Chung N N, Marsden B J, Wilkes B C. J. Med. Chem., 1991, 34: 3125.
[31] Yamazaki T, Zhu Y F, Probstl A, Chadha R K, Goodman M. J. Org. Chem., 1991, 56: 6644.
[32] Kyle D J, Hicks R P, Blake P R, Klimkowski V J. Inflammatory Disease and Therapy,1990, 5: 131.
[33] Kyle D J, Martin J A, Burch R M, Carter J P, Lu S F, Meeker S, Prosser J C, Sullivan J P, Togo J. J. Med. Chem., 1991, 34: 2649.
[34] Ji H T, Gomez-Vidal J A, Martasek P, Roman L J, Silverman R B. J. Med. Chem., 2006, 49: 6254.
[35] Fulda S, Wick W, Weller M, Debati K M. Nat. Med., 2002, 8: 808.
[36] Arn C R, Chiorean M V, Heldebrant M P, Gores G J, Kaufmann S H. J. Biol. Chem., 2002, 277: 44236.
[37] Yang L, Mashima T, Sato S, Mochizuki M, Sakamoto H, Yamori T, Oh-Hara T, Tsuruo T. Cancer Res., 2003, 63: 831.
[38] Sun H Y, Nikolovska-Coleska Z, Yang C Y, Xu L, Liu M L, Tomita Y, Pan H G, Yoshioka Y,Krajewski K, Roller P P, Wang S M. J. Am. Chem. Soc., 2004, 126: 16686.
[39] Sun H Y, Lu J F, Liu L, Yang C Y, Wang S M. ACS Chem. Biol., 2014, 9: 994.
[40] Mandal P K, Gao F Q, Lu Z, Ren Z Y, Ramesh R, Birtwistle J S, Kaluarachchi K K, Chen X M, Liao W S, McMurray J S. J. Med. Chem., 2011, 54: 3549.
[41] Miller S M, Simon R J, Ng S, Zuckermann R N, Kerr J M, Moos W H. Drug Develop. Res., 1995, 35(1): 20.
[42] Suwai S, Kodadek T. Org. Biomol. Chem., 2013, 11: 2088.
[43] Ventosa-Andrés P, Hradilova L , Krch Dň ák V. ACS Comb. Sci., 2014, 16: 359.
[44] Dubbelboer I R, Lilienberg E, Hedeland M, Bondesson U, Piquette-Miller M. Mol. Pharmaceutics, 2014, 11: 1301.
[45] Grotenbreg G M, Kronemeijer M, Timmer M S M, Oualid F E, Verdoes M, Spalburg E. J. Org. Chem., 2004, 69: 7851.
[46] Cardenas F, Thormann M, Feliz M, Caba J M, Lloyd-WillIams P, Giralt E. J. Org. Chem., 2001, 66: 4580.
[47] Dimaio J, Nguyen T M D, Lenieux C. J. Med. Chem., 1982, 25: 1432.
[48] Mosberg H I, Hurst R, Hruby V J. Life Sci., 1983, 32: 2565.
[49] Nam N H, Ye G F, Sun G Q, Parang K. J.Med.Chem., 2004, 47: 3131.
[50] Mendel S J. Clin. Cancer Res., 1997, 3(12): 2703.
[51] Sleuijfer S, Coquard R I, Papai Z J. Clin. Oncol., 2009, 27(19): 3126.
[52] Chamrád I, Rix U, Stukalov A, Gridling M, Parapatics K, Müller A, Altiok S, Colinge J, Superti-Furga G, Haura E B, Bennett K L. J. Proteome Res., 2013, 12: 4005.
[53] Schiller P W.Peptides, 1984, 6: 219.
[54] Wynants C, Bernd M, Kogler H. Tetrahedron, 1988, 44(3): 941.
[55] Figliozzi G M, Goldsmith R, Banville S C. Methods in Enzymology, 1996, 267: 437.
[56] Patch J A, Barron A E. J. Am. Chem. Soc., 2005, 25: 12092.
[57] Shin S B Y, Yoo B, Todaro L J, Kirshenbaum K. J. Am. Chem. Soc., 2007, 129(11): 3218.
[58] Dutton F E, Lee B H, Johnson S S, Coscarelli E M, Lee P H. J. Med. Chem., 2003, 46: 2057.
[59] Montero A, Beierle J M, Olsen C A, Ghadiri M R. J. Am. Chem.Soc., 2009, 131: 3033.
[60] Tahoori F, Balalaie S, Sheikhnejad R, Sadjadi M, Boloori P. Amino Acid, 2014, 46(4): 1033.
[61] Gerona-Navarro G, Yoel-Rodríguez, Mujtaba S, Frasca A, Patel J, Zeng L, Plotnikov A N, Osman R, Zhou M M. J. Am. Chem. Soc., 2011, 133: 2040.
[62] Yurek-George A, Cecil A R L, Mo A H K, Wen S J, Rogers H, Habens F,Maeda S, Yoshida M, Packham G, Ganesan A. J. Med. Chem., 2007, 50: 5720.
[63] Almeida A M, Li R, Gellman S H. J. Am. Chem. Soc., 2012, 134: 75.
[64] Johannesson P, Lindeberg G, Tong W M, Gogoll A, Synnergren B, Nyberg F, Karlen A, Hallberg A. J. Med. Chem., 1999, 42: 4524.
[65] Bailey K L, Molinski T F. J. Org. Chem., 1999, 64: 2500.
[66] Kase H, Kaneko M, Yamada K. J. Antibiot., 1987, 40: 450.
[67] Sano S, Ikai K, Kuroda H, Nakamura T, Obayashi A, Ezure Y, Enomoto H. J. Antibiot., 1986, 39: 1674.
[68] Pessah I N, Molinski T F, Meloy T D, Wong P, Buck E D, Allen P D, Mohr F C, Mack M M. Am. J. Physiol., 1997, 41: C601.
[69] Johannesson P, Lindeberg G, Johansson A, Nikiforovich G V, Gogoll A, Synnergren B, Greves M L, Nyberg F, Kerlen A, Hallerg A. J. Med. Chem., 2002, 45: 1767.
[70] Light A. Proteins, Structure and Function. Englewood Cliffs NJ:Prentice-Hall Inc. 1975.
[71] Murugavel R, Choudhury A, Walawalkar M G, Pothiraja R, Rao C N R. Chem. Rev., 2008, 108: 3549.
[72] Michele G, Raphaeel D. WO 2012123928 A1 20120920, 2012.
[73] Van Oijen A H, Erkelens C, van Boom J H, Liskamp R M J. J. Am. Chem. Soc., 1989, 111: 9103.
[74] Wu Y L, Kohn J. J. Am. Chem. Soc., 1991, 113: 687.
[75] Davies J S, Tremeer E J. J. Chem. Soc., 1987, 5: 1099.
[76] Thairivongs S, Blinn R J, Pal D T. J. Med. Chem.,1991, 34: 1276.
[77] Robinson J A. Acc. Chem.Res., 2008, 41: 1278.
[78] Patgiri A, Jochim A L, Arora P S. Acc. Chem. Res. 2008, 41: 1289.
[79] Bernal F, Tyler A F, Korsmeyer S J, Walensky L D, Verdine G L. J. Am. Chem. Soc., 2007, 129: 2456.
[80] Walensky L D, Bird G H. J. Med. Chem., 2014, 57: 6275.
[81] Bird G H, Gavathiotis E, LaBelle J L, Katz S G, Walensky L D. ACS Chem. Biol., 2014, 9: 831.
[82] Spokoyny A M, Zou Y K, Ling J J,Yu H T, Lin Y S, Pentelute B L. J. Am. Chem. Soc., 2013, 135: 5946.
[83] Brown S P, Smith A B. J. Am. Chem. Soc., 2015, 137: 4034.
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